Es obtained with the LTR-specific primers represent a sum of transcripts originating from the host promoter and of viral transcripts, which also contain LTR sequence at their 3' ends. Therefore, the measured ratio corresponds to the equation a+b/b, where `a' is the number of host-viral chimeric transcripts and `b' the number of viral transcripts (see Supplemental text 2). First, we determined this

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And 2). In contrast, this ratio became reversed upon partial activation of viral transcription with TNF-. The ratios between the viral mRNA and *mRNA were 38- and 11-fold in J-Lat 9.2 and 15.4, respectively (Figure 2D, bars 3 and 4). Using RT-DqPCR we further assessed levels of *mRNA relative to those of full-length mRNA (Figure S2). Interestingly, levels of PP5 *mRNA were 10-times lower compared

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